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You have chosen
The output below shows the number of features and samples BEFORE quality control.
## An object of class Seurat
## 14540 features across 3509 samples within 1 assay
## Active assay: RNA (14540 features)
The figure below shows violin plot and scatter plot for data before the quality control. From this figure, you should decide the parameters for quality control such as maximum percent.mt and minimum nFeature_RNA.
01-VlnPlot.png
## png
## 2
02-ScatterPlot.png
## png
## 2
You have chosen
nFeature_RNA_minnFeature_RNA_maxnCount_RNA_minnCount_RNA_maxpercent.mt_max.The output below shows the number of features and samples AFTER quality control.
## An object of class Seurat
## 14540 features across 3474 samples within 1 assay
## Active assay: RNA (14540 features)
The figures below show a subset of features that exhibit high cell-to-cell variation in the dataset. This subset (includes 2000 features) will be used in downstream analysis.
## Warning: Using `as.character()` on a quosure is deprecated as of rlang 0.3.0.
## Please use `as_label()` or `as_name()` instead.
## This warning is displayed once per session.
03-VariableFeaturePlot.png
## png
## 2
The figures below show the result of scaling and PCA.
## PC_ 1
## Positive: Kcne2, 1810010D01Rik, Slc25a4, Tnni3, Cox7a1
## Negative: Gsta1, Dpcr1, 2210407C18Rik, Krt19, Sptssb
## PC_ 2
## Positive: Cox6a1, Ctse, Cox6b1, Cox7b, Cox7c
## Negative: Igfbp7, Sparc, Col1a2, Col3a1, Vim
## PC_ 3
## Positive: Gm3776, Mgst2, Mal, Cyp2c65, Actg1
## Negative: Pla2g1b, Pgc, mt-Nd1, Clps, mt-Nd4
## PC_ 4
## Positive: 2210407C18Rik, Fabp3, Apoa1, 1810010D01Rik, Lpl
## Negative: Tuba1b, Ube2c, Tff2, Stmn1, Birc5
## PC_ 5
## Positive: Tff2, Ube2c, Birc5, Col1a2, Col3a1
## Negative: Cpe, Chgb, Pcsk2, Resp18, Scg5
04-VizDimLoadings.png
## png
## 2
05-DimPlot.png
## png
## 2
06-DimHeatmap.png
## png
## 2
07-DimHeatmap_mul.png
## png
## 2
From the figure below, you should determine significant PCs.
## Warning: Removed 28529 rows containing missing values (geom_point).
08-ElbowPlot.png
## Warning: Removed 28529 rows containing missing values (geom_point).
## png
## 2
09-ElbowPlot.png
## png
## 2
You have chosen 20 as maximum PC. The figure below shows the result of UMAP / tSNE.
## Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck
##
## Number of nodes: 3474
## Number of edges: 130680
##
## Running Louvain algorithm...
## Maximum modularity in 10 random starts: 0.8342
## Number of communities: 16
## Elapsed time: 3 seconds
## Stomach_1.CCAGACAAGTACGAGATC Stomach_1.GCGTCCACGTTGGTCGGT
## 13 13
## Stomach_1.CCTTTCTCGTAATCGGGT Stomach_1.AACCTACAACAATCACTT
## 13 13
## Stomach_1.AAGCGGCCTTTCGGCTGC
## 6
## Levels: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
10-UMAPPlot.png
## png
## 2
The list of differentially expressed features are shown below. This list could be used to assign cell type identity for each cluster.
## # A tibble: 32 x 7
## # Groups: cluster [16]
## p_val avg_logFC pct.1 pct.2 p_val_adj cluster gene
## <dbl> <dbl> <dbl> <dbl> <dbl> <fct> <chr>
## 1 7.02e-213 1.01 0.967 0.92 1.02e-208 0 Pla2g1b
## 2 2.47e- 13 0.754 0.385 0.313 3.59e- 9 0 Sprr1a
## 3 9.51e- 80 0.677 0.884 0.404 1.38e- 75 1 Aldh3a1
## 4 4.17e- 76 0.590 0.867 0.384 6.07e- 72 1 Mogat1
## 5 4.67e-152 1.26 0.748 0.158 6.79e-148 2 Ifrd1
## 6 3.37e-151 1.13 0.748 0.149 4.90e-147 2 Atf3
## 7 1.04e-100 0.530 1 1 1.52e- 96 3 Tff1
## 8 3.69e- 73 0.630 1 0.997 5.36e- 69 3 Gkn2
## 9 3.35e-173 2.08 0.675 0.094 4.87e-169 4 Pga5
## 10 1.61e-143 2.15 1 0.992 2.33e-139 4 Pgc
## # … with 22 more rows
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Gkn1 5.834622e-284 0.7435286 1.000 1.000 8.483540e-280
## Pla2g1b 7.017638e-213 1.0123723 0.967 0.920 1.020365e-208
## Clps 6.127530e-190 0.4892963 0.984 0.954 8.909429e-186
## Psca 8.860381e-123 0.5751298 0.997 0.989 1.288299e-118
## Txn1 1.246461e-85 -0.7817467 0.162 0.715 1.812354e-81
## Ghrl 3.240990e-79 0.5272985 0.592 0.359 4.712400e-75
## Car2 1.418208e-75 -0.6495360 0.466 0.876 2.062075e-71
## Ppia 2.377941e-72 -0.6841100 0.217 0.748 3.457526e-68
## 1810037I17Rik 1.970698e-71 -0.6430312 0.108 0.575 2.865395e-67
## Rpl9 8.116081e-71 -0.5967535 0.190 0.719 1.180078e-66
## Rpl27 1.678540e-70 -0.6275790 0.193 0.717 2.440598e-66
## Rpl24 1.699913e-69 -0.5776863 0.087 0.528 2.471674e-65
## Ndufa1 4.647717e-68 -0.6120877 0.097 0.540 6.757780e-64
## Hsp90ab1 4.616709e-64 -0.6140068 0.180 0.676 6.712695e-60
## Arf4 4.700751e-64 -0.5644040 0.075 0.481 6.834892e-60
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Gkn2 2.391965e-90 0.5409655 1.000 0.996 3.477917e-86
## Lgals2 3.523127e-87 0.4711213 1.000 0.941 5.122626e-83
## Aldh3a1 9.510956e-80 0.6770368 0.884 0.404 1.382893e-75
## Mogat1 4.174550e-76 0.5896683 0.867 0.384 6.069796e-72
## Mgst3 3.614634e-73 0.5159995 1.000 0.765 5.255678e-69
## Tmsb4x 8.013742e-72 0.3501160 1.000 0.990 1.165198e-67
## Gsta1 1.044180e-70 0.5230200 1.000 0.858 1.518238e-66
## Adh7 2.654264e-68 0.5298974 0.815 0.351 3.859300e-64
## Nqo1 2.563786e-63 0.5302935 0.918 0.457 3.727745e-59
## Pla2g1b 2.973106e-63 -1.7383464 0.939 0.927 4.322896e-59
## Gsta2 3.089962e-60 0.5128346 0.547 0.195 4.492805e-56
## Gsdma2 3.416304e-60 0.5230357 0.962 0.557 4.967306e-56
## Cbr3 9.944070e-58 0.5086896 0.615 0.248 1.445868e-53
## Akr1c19 1.342378e-56 0.4055000 0.528 0.189 1.951818e-52
## Gsta3 4.552514e-55 0.4813645 0.598 0.237 6.619355e-51
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Ifrd1 4.670350e-152 1.2551834 0.748 0.158 6.790690e-148
## Atf3 3.370519e-151 1.1287740 0.748 0.149 4.900734e-147
## Dnajb1 2.205224e-114 1.1093800 0.858 0.316 3.206395e-110
## Klf6 9.177430e-114 0.9412245 0.633 0.140 1.334398e-109
## Ier3 2.358062e-108 0.8997919 0.592 0.125 3.428623e-104
## Zfp36 1.892618e-101 0.8455687 0.685 0.184 2.751867e-97
## Nfkbia 1.752485e-100 0.9830152 0.616 0.154 2.548113e-96
## Areg 1.185916e-99 0.8625652 0.405 0.059 1.724321e-95
## Btg2 1.069351e-98 0.9726077 0.726 0.221 1.554837e-94
## Sfn 1.216227e-97 0.9554750 0.679 0.192 1.768394e-93
## Maff 1.419604e-89 0.7215712 0.362 0.051 2.064104e-85
## Zfand5 2.098083e-85 0.7558631 0.468 0.095 3.050613e-81
## H3f3b 2.049665e-75 0.7206564 0.973 0.754 2.980213e-71
## Errfi1 5.534808e-75 0.6221528 0.323 0.049 8.047612e-71
## Krt8 9.309093e-74 0.5351965 0.995 0.924 1.353542e-69
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Tff1 1.044806e-100 0.5298750 1.000 1.000 1.519147e-96
## Gkn2 3.686806e-73 0.6298872 1.000 0.997 5.360616e-69
## Gkn1 4.322604e-25 0.2752595 1.000 1.000 6.285066e-21
## Gsta1 1.596023e-21 0.3627302 0.982 0.870 2.320617e-17
## Pla2g1b 2.780446e-19 -1.3849175 0.791 0.941 4.042769e-15
## Lgals2 8.668870e-19 0.3069280 0.996 0.946 1.260454e-14
## Fos 5.436481e-17 -0.8559697 0.174 0.444 7.904643e-13
## Ubc 6.056312e-17 -0.7199254 0.262 0.541 8.805878e-13
## Mgst3 1.111019e-16 0.3324733 0.961 0.786 1.615422e-12
## Hsp90aa1 4.226800e-15 -0.7380539 0.163 0.425 6.145767e-11
## Dnajb1 3.017661e-14 -0.9935968 0.163 0.391 4.387679e-10
## Hspa1a 6.379185e-14 -0.7918818 0.124 0.355 9.275336e-10
## Ier2 1.871885e-12 -0.5683527 0.089 0.297 2.721721e-08
## Sptssb 5.859878e-12 0.3318405 0.851 0.651 8.520262e-08
## Pdlim1 3.115265e-11 -0.6360393 0.078 0.263 4.529596e-07
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Pga5 3.348012e-173 2.0818119 0.675 0.094 4.868009e-169
## Pgc 1.605181e-143 2.1475280 1.000 0.992 2.333934e-139
## Muc6 3.199077e-121 1.5321825 0.394 0.036 4.651458e-117
## Tstd1 9.064977e-115 1.4772478 0.635 0.137 1.318048e-110
## Psca 1.153110e-106 -1.4048496 0.949 0.994 1.676621e-102
## Gkn2 7.249260e-105 -1.8686570 0.993 0.997 1.054042e-100
## A4gnt 3.010350e-104 1.2339466 0.347 0.033 4.377049e-100
## Gkn1 1.027964e-102 -1.2025608 1.000 1.000 1.494660e-98
## Tff1 5.544897e-102 -1.3063453 1.000 1.000 8.062280e-98
## Agr2 2.566888e-91 1.1364336 0.985 0.828 3.732256e-87
## Gsta1 7.053360e-90 -1.9218254 0.602 0.903 1.025558e-85
## Creb3l4 6.360726e-88 0.9851435 0.307 0.031 9.248496e-84
## Cfi 1.199434e-81 1.5312972 0.628 0.197 1.743977e-77
## Bex4 4.055678e-72 0.9485392 0.255 0.026 5.896955e-68
## Krt19 1.735393e-71 -1.2198483 0.682 0.896 2.523261e-67
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Gm23935 3.577144e-179 3.1225846 0.904 0.262 5.201167e-175
## Gm26917 8.176501e-154 3.4071532 0.904 0.346 1.188863e-149
## Gm42418 1.585654e-149 2.9562911 0.952 0.510 2.305540e-145
## mt-Cytb 2.684246e-119 0.9433085 1.000 0.997 3.902894e-115
## Lars2 2.778163e-113 1.8151120 0.357 0.033 4.039449e-109
## mt-Co1 1.418196e-112 0.8325202 1.000 0.999 2.062058e-108
## mt-Nd1 2.343701e-110 0.8354652 1.000 1.000 3.407741e-106
## mt-Nd4 1.575383e-101 0.8075484 1.000 0.994 2.290607e-97
## mt-Nd2 6.039149e-84 0.7525960 0.996 0.972 8.780923e-80
## Slc25a5 1.405658e-69 -0.9078609 0.636 0.940 2.043827e-65
## Ftl1 1.347734e-66 -1.0727143 0.463 0.878 1.959606e-62
## mt-Nd3 4.832404e-57 0.8543032 0.949 0.857 7.026316e-53
## Calm1 1.754656e-49 -0.8369529 0.544 0.866 2.551270e-45
## mt-Nd5 1.995694e-46 0.6712232 0.974 0.904 2.901738e-42
## Cox6b1 4.971354e-45 -0.8000391 0.507 0.887 7.228349e-41
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Krt7 5.427993e-147 1.1138507 0.455 0.033 7.892302e-143
## S100a10 3.644044e-136 1.1275526 0.532 0.055 5.298439e-132
## Clca1 1.531815e-135 1.3579613 0.300 0.011 2.227259e-131
## Krt20 9.086730e-120 1.4891010 0.395 0.032 1.321211e-115
## Gpa33 3.789409e-105 0.8499814 0.313 0.021 5.509800e-101
## Rbp1 3.176833e-103 1.3357134 0.562 0.090 4.619115e-99
## Anxa2 9.690251e-96 1.2283537 0.815 0.244 1.408963e-91
## Fabp2 8.938581e-94 1.4914049 0.708 0.181 1.299670e-89
## Pdlim1 5.388418e-90 1.2351379 0.751 0.212 7.834759e-86
## Gstm3 2.003103e-88 1.1419628 0.476 0.074 2.912511e-84
## Lgals4 3.732228e-86 1.3214595 0.884 0.363 5.426660e-82
## Akr1b8 1.036088e-78 1.0338908 0.571 0.122 1.506472e-74
## S100a6 1.382268e-78 1.2047904 0.983 0.752 2.009818e-74
## S100a14 1.750184e-78 0.8273095 0.378 0.050 2.544768e-74
## Dmbt1 1.949927e-73 1.0663237 0.429 0.069 2.835194e-69
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Kcne2 0.000000e+00 1.6642299 0.608 0.014 0.000000e+00
## Igfbp2 6.719875e-283 1.4957356 0.498 0.009 9.770699e-279
## Tnni3 2.448050e-279 1.9687220 0.696 0.037 3.559464e-275
## 1810010D01Rik 1.914803e-270 2.8719327 0.912 0.108 2.784124e-266
## Cox7a1 1.385273e-258 2.0817628 0.784 0.065 2.014187e-254
## Hamp2 3.704372e-254 2.4131786 0.744 0.057 5.386158e-250
## Ckb 6.684357e-241 1.8713014 0.775 0.066 9.719055e-237
## Fabp3 1.155497e-236 2.1772580 0.811 0.085 1.680093e-232
## Fabp12 2.047568e-234 1.0750641 0.401 0.006 2.977164e-230
## Apoa4 2.334622e-204 0.9693374 0.339 0.004 3.394540e-200
## Slc26a9 9.424181e-195 1.0492774 0.436 0.016 1.370276e-190
## Atp4a 7.248993e-189 2.9165744 0.960 0.248 1.054004e-184
## Glod5 2.498152e-188 1.2471050 0.511 0.030 3.632313e-184
## Apoa1 6.947210e-184 3.0521440 0.965 0.256 1.010124e-179
## Gga2 4.264900e-180 1.1350282 0.454 0.023 6.201165e-176
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Birc5 1.304418e-307 1.4634678 0.653 0.020 1.896624e-303
## Ube2c 4.001223e-262 1.6490295 0.638 0.028 5.817778e-258
## Ccna2 8.799713e-249 1.0593419 0.437 0.007 1.279478e-244
## Stmn1 4.523567e-225 1.5081790 0.739 0.056 6.577267e-221
## Pclaf 1.512602e-222 1.2646397 0.513 0.019 2.199323e-218
## Cdca3 6.542137e-198 1.0279231 0.452 0.016 9.512267e-194
## Cdk1 1.401522e-196 0.9147094 0.382 0.009 2.037814e-192
## Ccnb1 4.174912e-173 0.9006089 0.307 0.005 6.070322e-169
## Tk1 1.669722e-169 0.9281937 0.412 0.017 2.427776e-165
## Spc24 2.476940e-166 1.0550353 0.457 0.024 3.601471e-162
## Cdc20 3.378778e-158 0.8953592 0.296 0.006 4.912744e-154
## Tuba1b 2.226507e-156 1.7135006 0.809 0.127 3.237341e-152
## Cenpa 1.276602e-147 0.9584450 0.337 0.012 1.856179e-143
## Cdca8 5.404025e-147 0.8019275 0.357 0.014 7.857452e-143
## Ccnb2 4.283088e-142 0.8554981 0.327 0.012 6.227609e-138
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Hsd17b2 2.006127e-75 0.9126291 0.442 0.055 2.916909e-71
## Mgll 3.591030e-74 0.8974862 0.436 0.054 5.221357e-70
## Rep15 2.061425e-65 1.0079266 0.750 0.189 2.997312e-61
## 2210407C18Rik 3.129180e-64 1.0232586 1.000 0.815 4.549827e-60
## Lypd8 1.053758e-63 1.3353932 0.968 0.408 1.532165e-59
## Rnase4 1.816138e-63 1.0492192 0.647 0.143 2.640665e-59
## Ces2c 1.801622e-57 0.8637546 0.538 0.107 2.619559e-53
## Sectm1b 4.579220e-57 0.9313673 0.583 0.128 6.658186e-53
## Cdkn1a 7.832693e-54 0.8994625 0.718 0.197 1.138874e-49
## Ctse 9.508335e-54 0.8830711 1.000 0.679 1.382512e-49
## AA467197 4.218632e-53 0.8390324 0.551 0.117 6.133891e-49
## Gsta1 7.654728e-52 0.7689588 1.000 0.873 1.112997e-47
## Mal 1.326133e-51 0.9575847 0.904 0.358 1.928197e-47
## Fhl1 2.610769e-50 0.8827660 0.756 0.231 3.796057e-46
## Psca 3.543829e-50 0.6119393 1.000 0.990 5.152728e-46
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Vim 0.000000e+00 2.592415 0.594 0.001 0.000000e+00
## Igfbp7 2.035494e-257 3.421437 0.551 0.007 2.959608e-253
## Col1a2 3.058808e-252 3.125029 0.464 0.004 4.447507e-248
## Col3a1 7.914411e-237 2.959682 0.449 0.004 1.150755e-232
## C1s1 1.168453e-228 1.533967 0.304 0.000 1.698930e-224
## Dpt 4.854974e-226 2.329031 0.362 0.001 7.059132e-222
## Bgn 4.063912e-222 2.349416 0.420 0.004 5.908929e-218
## Tgfbi 2.600395e-219 1.940979 0.319 0.001 3.780974e-215
## Col6a1 3.918576e-218 1.957259 0.304 0.000 5.697609e-214
## Postn 1.534401e-215 2.518132 0.348 0.001 2.231019e-211
## Ly6a 3.505807e-193 2.493357 0.420 0.005 5.097444e-189
## Rarres2 6.155455e-191 2.068920 0.333 0.002 8.950032e-187
## Mxra8 8.856066e-187 1.515949 0.275 0.001 1.287672e-182
## Sparc 1.473318e-182 3.884966 0.609 0.019 2.142204e-178
## Emp3 1.600232e-178 1.809340 0.391 0.005 2.326737e-174
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Chgb 0.000000e+00 3.522201 0.887 0.008 0.000000e+00
## Pcsk2 0.000000e+00 3.066393 0.755 0.006 0.000000e+00
## Resp18 0.000000e+00 3.024242 0.774 0.007 0.000000e+00
## Scg5 0.000000e+00 2.639698 0.717 0.006 0.000000e+00
## Pcsk1 5.736159e-278 1.725249 0.434 0.001 8.340375e-274
## Pnoc 1.067325e-263 2.158669 0.415 0.001 1.551891e-259
## Tm4sf4 5.431781e-258 1.746036 0.377 0.001 7.897810e-254
## Pcsk1n 2.410015e-257 2.285868 0.509 0.004 3.504162e-253
## Fam183b 3.018361e-250 1.630978 0.434 0.002 4.388697e-246
## Cpe 4.038447e-246 3.710660 0.849 0.022 5.871902e-242
## Mrln 4.453570e-236 1.602094 0.377 0.001 6.475490e-232
## Hap1 4.380017e-215 1.624137 0.396 0.002 6.368545e-211
## Scg3 5.891213e-205 1.403121 0.321 0.001 8.565823e-201
## Chga 1.740856e-194 3.454803 0.585 0.011 2.531205e-190
## Rbp4 1.329830e-193 2.322627 0.491 0.007 1.933573e-189
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Isg15 2.187055e-250 2.1429401 0.750 0.014 3.179979e-246
## Oasl2 1.829799e-186 1.2927125 0.615 0.013 2.660528e-182
## Ifit1 1.594254e-177 1.2462240 0.269 0.001 2.318045e-173
## Igtp 2.033744e-103 1.0126679 0.288 0.005 2.957064e-99
## Bst2 1.057173e-90 1.3804263 0.596 0.034 1.537130e-86
## Ifih1 9.247555e-80 0.6437471 0.308 0.008 1.344595e-75
## Psmb8 2.452663e-77 0.8696282 0.327 0.010 3.566173e-73
## Oas1a 1.042919e-73 1.0868185 0.577 0.039 1.516404e-69
## Irf7 1.010543e-71 1.2330440 0.462 0.025 1.469330e-67
## Rtp4 9.771428e-63 1.0092662 0.288 0.010 1.420766e-58
## Stat1 2.027288e-34 0.7456908 0.308 0.024 2.947676e-30
## Cd74 1.672796e-33 0.6988904 0.269 0.019 2.432245e-29
## AW112010 3.674412e-29 1.4081128 0.481 0.072 5.342595e-25
## Lypd8 8.635484e-27 1.8897851 0.962 0.425 1.255599e-22
## B2m 4.464688e-25 1.4043240 0.923 0.382 6.491657e-21
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Try10 1.157410e-244 1.8891877 0.459 0.002 1.682874e-240
## Try4 1.967400e-104 2.4191559 0.378 0.007 2.860600e-100
## Gif 1.735543e-89 3.6192492 1.000 0.088 2.523479e-85
## Furin 3.605310e-72 1.9090808 0.486 0.021 5.242120e-68
## Chia1 9.942700e-39 4.5919771 0.973 0.245 1.445669e-34
## Tmed6 3.346438e-38 2.7383626 0.676 0.093 4.865722e-34
## Pdia2 2.052446e-33 1.8922693 0.568 0.070 2.984256e-29
## Pnliprp2 2.606213e-31 1.6864126 0.351 0.027 3.789433e-27
## Nupr1 1.054439e-29 1.7899015 0.541 0.068 1.533154e-25
## Pla2g1b 1.124461e-25 3.3310525 1.000 0.928 1.634966e-21
## Clps 1.214622e-25 3.5986804 1.000 0.959 1.766060e-21
## Pgc 9.289057e-23 1.9385822 1.000 0.992 1.350629e-18
## Tmsb4x 6.092379e-19 -1.3834447 0.892 0.992 8.858320e-15
## Gsta4 1.871862e-15 -1.6489358 0.378 0.908 2.721687e-11
## mt-Co1 6.041881e-15 -0.8115644 0.973 0.999 8.784895e-11
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Cldn2 1.852184e-242 1.4451376 0.528 0.003 2.693075e-238
## Aqp5 9.670231e-181 2.2865148 0.722 0.015 1.406052e-176
## Kcne3 8.328407e-133 2.5739196 0.889 0.038 1.210950e-128
## Wfdc18 3.820056e-104 0.9598366 0.278 0.003 5.554362e-100
## Pigr 6.703236e-91 1.5485343 0.583 0.022 9.746506e-87
## Klk1 1.450981e-50 1.8592600 0.722 0.071 2.109727e-46
## Cldn7 5.823288e-50 0.8969914 0.333 0.013 8.467060e-46
## Muc6 3.912178e-46 1.7602434 0.639 0.058 5.688307e-42
## Cd44 2.728295e-45 1.1301693 0.306 0.013 3.966942e-41
## Cela1 3.717904e-39 2.9635020 1.000 0.250 5.405832e-35
## Sord 4.397858e-38 1.1147528 0.361 0.022 6.394485e-34
## Rbp1 2.766194e-36 1.6954344 0.778 0.115 4.022046e-32
## Spp1 3.452239e-36 2.5246215 0.750 0.115 5.019556e-32
## Cpn1 6.650333e-36 1.2681747 0.556 0.056 9.669584e-32
## Hgfac 1.634263e-33 0.9580063 0.417 0.033 2.376219e-29
## p_val avg_logFC pct.1 pct.2 p_val_adj
## Sh2d6 0.000000e+00 2.982184 0.815 0.004 0.000000e+00
## Lrmp 0.000000e+00 2.891251 0.889 0.005 0.000000e+00
## Alox5ap 0.000000e+00 2.781436 0.889 0.008 0.000000e+00
## Hck 0.000000e+00 2.715583 0.852 0.002 0.000000e+00
## Rgs13 0.000000e+00 2.681779 0.741 0.003 0.000000e+00
## Alox5 0.000000e+00 2.539026 0.815 0.001 0.000000e+00
## Dclk1 0.000000e+00 2.457819 0.815 0.003 0.000000e+00
## Spib 0.000000e+00 1.971029 0.630 0.002 0.000000e+00
## Cdhr2 2.560642e-278 1.887951 0.481 0.001 3.723174e-274
## Trpm5 7.341159e-274 2.028558 0.519 0.002 1.067405e-269
## Strip2 1.645496e-260 1.508359 0.407 0.001 2.392552e-256
## Gng13 1.178249e-231 2.412228 0.667 0.006 1.713174e-227
## Rac2 1.700144e-229 1.906334 0.593 0.004 2.472010e-225
## Sh2d7 1.143929e-225 1.505336 0.407 0.001 1.663273e-221
## Nrgn 1.422247e-225 1.872588 0.407 0.001 2.067947e-221
11-Interested_VlnPlot.png
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12-Interested_FeaturePlot.png
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13-Top10Marker_Heatmap.png
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